Index

A | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W

A

annotate() (in module utils.annotation)
annotate_CRF_test() (in module utils.annotation_scripts.annotation_CRF)
annotate_CRF_train() (in module utils.annotation_scripts.annotation_CRF)
annotate_DT_test() (in module utils.annotation_scripts.annotation_DT)
annotate_DT_train() (in module utils.annotation_scripts.annotation_DT)
annotate_HTK_test() (in module utils.annotation_scripts.annotation_HTK)
annotate_HTK_train() (in module utils.annotation_scripts.annotation_HTK)
APP() (in module utils.eval)

C

cartesian() (in module utils.opt)
cartesian_prod() (in module utils.opt)
choose_features() (in module utils.annotation)
cluster() (in module evaluation_clustering)
clustering_to_file() (in module utils.output_format)
clustering_to_string() (in module utils.output_format)
combination() (in module utils.eval)
compare_params() (in module utils.plot)
compute_similarity_basic() (in module run_basic)
compute_similarity_ova() (in module run_ova)
compute_similarity_wem() (in module run_wem)
confidence_analysis (module)
ConfigError
convergence_analysis (module)
convergence_curve() (in module utils.plot)
count_aqua_docs() (in module utils.parse_stat)
count_aqua_docs_score() (in module utils.parse_stat)

D

distribution_analysis() (in module utils.matrix_op)
do_classify_step() (in module utils.classify)

E

em_step() (in module utils.em_analysis)
em_step_threaded() (in module utils.em_analysis)
estimate_parameters_em() (in module utils.em_analysis)
estimate_poisson_binomial() (in module utils.probability_fit)
evaluate() (in module evaluation_clustering)
(in module evaluation_retrieval)
evaluation_clustering (module)
evaluation_retrieval (module)
expected_binary() (in module utils.plot)

F

F() (in module utils.eval)
flush() (utils.output_format.Tee method)
fraction_plot() (in module utils.plot)

G

generate_basic_hmm() (in module utils.classification_scripts.basic_hmm)
get_Aquaint_graph() (in module utils.plot)
get_config_option() (in module utils.read_config)
ground_truth_AQUA_qrel() (in module utils.parse)
ground_truth_indices() (in module utils.parse)
ground_truth_pairs() (in module utils.parse)
ground_truth_qrel() (in module utils.parse)
grp2idx() (in module utils.eval)

H

heatmap() (in module utils.plot)
histo_cluster() (in module utils.plot)

I

init_folder() (in module utils.output_format)
InputError
is_in_upper_level() (in module utils.plot)

K

keep_k_best() (in module utils.matrix_op)

L

label_CRF() (in module utils.classification_scripts.classification_CRF)
label_DT() (in module utils.classification_scripts.classification_DT)
label_HTK() (in module utils.classification_scripts.classification_HTK)
load_cooc() (in module utils.output_format)
load_file() (in module run_ova)
log() (in module utils.output_format)

M

main (module)
mds_representation() (in module utils.plot)
mi() (in module utils.eval)
mutual_info() (in module utils.eval)

N

nmi() (in module utils.eval)
normalize() (in module utils.matrix_op)
normalize_gauss_global() (in module utils.matrix_op)
normalize_gauss_local() (in module utils.matrix_op)
normalize_min_max() (in module utils.matrix_op)

O

on_the_fly_cvg() (in module utils.plot)

P

P() (in module utils.eval)
pairs_combination() (in module utils.opt)
pairs_combination_indices() (in module utils.opt)
parse_AQUA() (in module utils.parse_stat)
parse_AQUA_entities() (in module utils.parse)
(in module utils.parse_stat)
parse_AQUA_single() (in module utils.parse_stat)
parse_AQUA_single_partial() (in module utils.parse)
parse_audio() (in module utils.parse)
parse_cmd_line() (in module utils.read_config)
parse_data() (in module utils.parse)
parse_ground_truth() (in module utils.parse)
parse_NER() (in module utils.parse)
parse_pattern() (in module utils.parse)
ParsingError
pie_chart() (in module utils.plot)
plot_Aquaint_graph() (in module utils.plot)
product_combination() (in module utils.opt)

R

R() (in module utils.eval)
rand() (in module utils.eval)
random() (in module utils.annotation)
read_config_file() (in module utils.read_config)
Read_file() (in module utils.eval)
readable_clustering() (in module utils.output_format)
retrieve_aqua_entities() (in module utils.parse_stat)
retrieve_aqua_occurrences() (in module utils.parse_stat)
retrieve_aqua_occurrences_sentences() (in module utils.parse_stat)
ROC_analysis() (in module utils.matrix_op)
ROC_mean_analysis() (in module utils.matrix_op)
run_basic (module)
run_ova (module)
run_wem (module)

S

sample_from_pdf() (in module utils.probability_fit)
save_coocc() (in module utils.output_format)
save_coocc_mcl() (in module utils.output_format)
signal_handler() (in module utils.error)
similarity_analysis (module)
split_data() (in module utils.one_step)
split_on_ground_truth_no_indices() (in module utils.parse)
stat_aqua() (in module utils.parse_stat)
statistical_analysis_binary() (in module utils.matrix_op)
statistical_analysis_weighted() (in module utils.matrix_op)

T

Tee (class in utils.output_format)
thread_step() (in module utils.one_step)
train_CRF() (in module utils.classification_scripts.classification_CRF)
train_DT() (in module utils.classification_scripts.classification_DT)
train_HTK() (in module utils.classification_scripts.classification_HTK)

U

update_similarity() (in module utils.classify)
update_similarity_unique() (in module utils.classify)
utils (module)
utils.annotation (module)
utils.annotation_scripts (module)
utils.annotation_scripts.annotation_CRF (module)
utils.annotation_scripts.annotation_DT (module)
utils.annotation_scripts.annotation_HTK (module)
utils.classification_scripts (module)
utils.classification_scripts.basic_hmm (module)
utils.classification_scripts.classification_CRF (module)
utils.classification_scripts.classification_DT (module)
utils.classification_scripts.classification_HTK (module)
utils.classify (module)
utils.em_analysis (module)
utils.error (module)
utils.eval (module)
utils.matrix_op (module)
utils.one_step (module)
utils.opt (module)
utils.output_format (module)
utils.parse (module)
utils.parse_stat (module)
utils.plot (module)
utils.probability_fit (module)
utils.read_config (module)

V

V() (in module utils.eval)

W

warning() (in module utils.error)
weka_compatible_string() (in module utils.annotation_scripts.annotation_DT)
weka_format() (in module utils.annotation_scripts.annotation_DT)
write() (utils.output_format.Tee method)